The Advent of Multi-Omics Cancer-Diagnosis: NGS, Bioinformatics and Precision Oncology using Tata Memorial Centre and Homi Bhabha Cancer Model
DOI:
https://doi.org/10.59436/jsiane.v6i2.7.2583-2093Keywords:
Molecular Diagnostics, Next-Generation Sequencing (NGS), Precision Oncology, Bioinformatics, Statistics, Advanced Cancer Research, Tata Memorial center (TMC), Homi Bhabha Cancer Hospital (HBCH&RC)Abstract
Recent years have led to the exploration of cancer diagnostic techniques. No longer are we stuck on the one-size-fits-all approach, but a method of diagnosing cancer specific to each individual, using a combination of numerous oncological tests at once. This review explains why the Homi Bhabha Cancer Hospital and Research Center in New Chandigarh has established a centralized system via the hub and spoke model, allowing different communities in India to have decentralized access. Multi-Omics Oncology diagnostics have brought our labs from generalized cytotoxic treatment to specific analysis of molecular aberrations using techniques such as polymerase chain reaction (PCR), next-generation sequencing (NGS), and fluorescence in situ hybridization (FISH). We will also learn about the additional step of our multi-factor detection becoming intelligent clinical diagnostics with the help of GATK and statistical modeling (Kaplan-Meier survival analysis)
References
Rajendr. A (2024). Tata Memorial Centre Textbook of Oncology. https://link.springer.com/content/pdf/bfm:978-981-99-3378-5/1
Mauger, F., How-Kit, A., & Tost, J. (2017). COLD-PCR Technologies in the Area of Personalized Medicine: Methodology and Applications. Molecular Diagnosis & Therapy, 21(3), 269-283. https://doi.org/10.1007/s40291-016-0254-8
Zhang, Y. & Tian, L. (2024). Advances and challenges in the use of liquid biopsy in gynaecological oncology. Heliyon, 10(20), e39148. https://doi.org/10.1016/j.heliyon.2024.e39148
Liu, Y., Liu, B., Li, X., Li, J., Qin, H., Tang, C., Guo, W., Hu, H., Li, S., Chen, C., Gao, H., & Liu, X. (2011). A comparison of ARMS and direct sequencing for EGFR mutation analysis and Tyrosine Kinase Inhibitors treatment prediction in body fluid samples of Non-Small-Cell Lung Cancer patients. Journal of Experimental & Clinical Cancer Research, 30(1). https://doi.org/10.1186/1756-9966-30-111
Jia, S., Zhang, R., Li, Z., & Li, J. (2017). Clinical and biological significance of circulating tumor cells, circulating tumor DNA, and exosomes as biomarkers in colorectal cancer. http://www.oncotarget.com/index.php?journal=oncotarget&page=article&op=view&path%5B%5D=17184&path%5B%5D=55012
Liu, Y., Liu, B., Li, X., Li, J., Qin, H., Tang, C., Guo, W., Hu, H., Li, S., Chen, C., Gao, H., & Liu, X. (2011). A comparison of ARMS and direct sequencing for EGFR mutation analysis and Tyrosine Kinase Inhibitors treatment prediction in body fluid samples of Non-Small-Cell Lung Cancer patients. Journal of Experimental & Clinical Cancer Research, 30(1). https://doi.org/10.1186/1756-9966-30-111
Joseph, S. (2017). Chromosome Evolution and Genome Reconstruction in Falcon Species. https://kar.kent.ac.uk/65667/1/84S.JOSEPH%20Thesis.pdf
[Missing authors] (2024). Frontiers | Performance of MYC, BCL2, and BCL6 break-apart FISH in small biopsies with large B-cell lymphoma: a retrospective Cytopathology Hematopathology Interinstitutional Consortium study. https://doi.org/10.3389/fonc.2024.1408238/full
Srivastava, A., Wang, Y., Huang, R., Skinner, C., Thompson, T., Pollard, L., Wood, T., Luo, F., Stevenson, R., Polimanti, R., Gelernter, J., Lin, X., Lim, I., Wu, Y., Teh, A., Chen, L., Aris, I., Soh, S., Tint, M., ... Owaidah, T. (2016). Human genome meeting 2016. Human Genomics, 10(S1). https://doi.org/10.1186/s40246-016-0063-5
Jiang, W., Zhang, B., Xu, J., Xue, L., & Wang, L. (2024). Current status and perspectives of esophageal cancer: a comprehensive review. Cancer Communications, 45(3), 281-331. https://doi.org/10.1002/cac2.12645
Ho, H., Chung, K., Kan, C., & Wong, S. (2024). Liquid Biopsy in the Clinical Management of Cancers. https://www.mdpi.com/1422-0067/25/16/8594/pdf?version=1723004108
Hayes, C., Nakahara, H., Ono, A., Tsuge, M., & Oka, S. (2024). From Omics to Multi-Omics: A Review of Advantages and Tradeoffs. Genes, 15(12), 1551. https://doi.org/10.3390/genes15121551
2015. Database resources of the National Center for Biotechnology Information. https://academic.oup.com/nar/article-pdf/44/D1/D7/9483860/gkv1290.pdf
Grünewald, T., Alonso, M., Avnet, S., Banito, A., Burdach, S., Cidre‐Aranaz, F., Pompo, G., Distel, M., Dorado‐Garcia, H., Garcia‐Castro, J., González‐González, L., Grigoriadis, A., Kasan, M., Koelsche, C., Krumbholz, M., Lecanda, F., Lemma, S., Longo, D., Madrigal‐Esquivel, C., ... Heymann, D. (2020). Sarcoma treatment in the era of molecular medicine. EMBO Molecular Medicine, 12(11). https://doi.org/10.15252/emmm.201911131
Masuda, S., Lemaitre, F., Barten, M., Bergan, S., Shipkova, M., Gelder, T., Vinks, S., Wieland, E., Bornemann-Kolatzki, K., Brunet, M., Winter, B., Dieterlen, M., Elens, L., Ito, T., Johnson-Davis, K., Kunicki, P., Lawson, R., Lloberas, N., Marquet, P., ... Langman, L. (2024). Everolimus Personalized Therapy: Second Consensus Report by the International Association of Therapeutic Drug Monitoring and Clinical Toxicology. Therapeutic Drug Monitoring, 47(1), 4-31. https://doi.org/10.1097/ftd.0000000000001250
Downloads
Published
Issue
Section
License
Copyright (c) 2026 Maharaj Singh Educational Research Development Society

This work is licensed under a Creative Commons Attribution 4.0 International License.



